You need a compression test. If compression remains OK for the type of engine, then the scoring is not too bad. You must however remove the cause of the scoring. If the scoring is due to a broken piston ring then it is no good compression testing without replacing the rings first, and running the engine for long enough to bed in the new rings. Diesel engines require high compression ratios and may run badly or refuse to start if compression is low. Petrol engines are a bit more foregiving in that regard.
Ive honed each cylinder however whats caused it is each gudging pin which had moved to touch the cylinders in each pot, the engine design does not have circlips in each piston
If the gudgeon pins are not circlipped or held with a pinch bolt they should have a plug(probably aluminium) in each end to allow them to run on the bore without damaging it, they need to be free to rotate as they run to avoid bad wear.